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highlights:2025:plantseg [2025/04/06 12:59] – created Ronell Sicathighlights:2025:plantseg [2025/04/06 13:07] (current) – Ronell Sicat
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 <WRAP center round box 100%> {{:favicon.ico?nolink&0x30}} <fs:26px>** KVL Staff on Project**</fs> <WRAP center round box 100%> {{:favicon.ico?nolink&0x30}} <fs:26px>** KVL Staff on Project**</fs>
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 Maryam Rahmati Ishka, Hayley Sussman, Yunfei Hu, Mashael Daghash Alqahtani, Eric Craft, **Ronell Sicat**, Minmin Wang, Li'ang Yu, Rachid Ait-Haddou, Bo Li, Georgia Drakakaki, Andrew DL Nelson, Miguel Pineros, Arthur Korte, Łukasz Jaremko, Christa Testerink, Mark Tester, Magdalena M Julkowska (2025) Natural variation in salt-induced changes in root:shoot ratio reveals SR3G as a negative regulator of root suberization and salt resilience in Arabidopsis eLife 13:RP98896. https://doi.org/10.7554/eLife.98896.4. Maryam Rahmati Ishka, Hayley Sussman, Yunfei Hu, Mashael Daghash Alqahtani, Eric Craft, **Ronell Sicat**, Minmin Wang, Li'ang Yu, Rachid Ait-Haddou, Bo Li, Georgia Drakakaki, Andrew DL Nelson, Miguel Pineros, Arthur Korte, Łukasz Jaremko, Christa Testerink, Mark Tester, Magdalena M Julkowska (2025) Natural variation in salt-induced changes in root:shoot ratio reveals SR3G as a negative regulator of root suberization and salt resilience in Arabidopsis eLife 13:RP98896. https://doi.org/10.7554/eLife.98896.4.
  
-The open-source Matlab tool can be found in github: [[https://github.com/ronellsicat/PlantSeg|https://github.com/ronellsicat/PlantSeg]]. The tool uses color space partitioning for segmentation, and also provides simple manual segmentation tools for proofreading. Results are also automatically exported to csv files for easy access for post-processing and analysis.+The open-source Matlab tool can be found in github: [[https://github.com/ronellsicat/PlantSeg|https://github.com/ronellsicat/PlantSeg]]. The tool uses color space partitioning for segmentation, and also provides simple manual segmentation tools for proofreading. Results are also automatically exported to csv files for easy access for post-processing and analysis. Technical details and algorithms used in the tool are described in [[https://github.com/ronellsicat/PlantSeg/blob/main/archive/Algorithm%20Details.pdf|this document]].
          
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