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training:scivis:2023:avizoilastik [2023/10/26 12:20] – Ronell Sicattraining:scivis:2023:avizoilastik [2024/08/20 07:33] (current) – Ronell Sicat
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-====== Scientific Visualization 210: Avizo and Ilastik for Image Segmentation and 3D Analysis ======+======Visualization 210: AI-Assisted Image Segmentation and 3D Analysis using Avizo and Ilastik======
  
 <WRAP group> <WRAP quarter column> <WRAP center round box 110%> {{:icon:twbs:link:w-25:h-auto:calendar3.svg?nolink&}} <tab1> <fs:26px>** Date**</fs> <WRAP group> <WRAP quarter column> <WRAP center round box 110%> {{:icon:twbs:link:w-25:h-auto:calendar3.svg?nolink&}} <tab1> <fs:26px>** Date**</fs>
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 <WRAP quarter column> <WRAP center round box 110%> {{:icon:twbs:link:w-25:h-auto:map.svg?nolink&}} <tab1> <fs:26px>** Venue**</fs> <WRAP quarter column> <WRAP center round box 110%> {{:icon:twbs:link:w-25:h-auto:map.svg?nolink&}} <tab1> <fs:26px>** Venue**</fs>
  
-  * Auditorium between Bldgs. 4 and 5+  * Auditorium between Bldgs. 2 and 3
  
 <wrap indent></wrap> \\ <wrap indent></wrap> \\
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-{{  :wiki:training:2023:avizoilastikteaser.png?direct&  }}+{{  wiki:training:2023:avizoilastikteaser_2.png?direct&  }}
  
 <WRAP center round box download 100%> <WRAP center round box download 100%>
  <fs:26px>** Workshop Materials**</fs>  <fs:26px>** Workshop Materials**</fs>
  
-  * Slides: +  * [[https://download.vis.kaust.edu.sa/pub/workshops/2023/SciVis210Segmentation/Datasets.zip|Download datasets]]. 
-  * Datasets:+  * {{ :wiki:training:2023:image_segmentation_and_3D_analysis.pdf |Download slides}}.
  
 </WRAP> </WRAP>
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  <fs:26px>** How to Prepare?**</fs>  <fs:26px>** How to Prepare?**</fs>
  
-  * Bring a laptop with [[https://it.kaust.edu.sa/software/avizo|Avizo]] and [[https://www.ilastik.org/download.html|Ilastik]] installed. +  * Bring a laptop with [[https://it.kaust.edu.sa/software/avizo|Avizo 2023.1.1]] and [[https://www.ilastik.org/download.html|Ilastik 1.4.0]] installed. 
-  * To install Avizo's AI segmentation tools, [[https://www.youtube.com/watch?v=MSTZM-gsn3E|follow these instructions]].+  * To use Avizo's AI segmentation tools, [[https://www.youtube.com/watch?v=MSTZM-gsn3E|install a Deep Learning Environment]]. 
 +  * Bring a mouse with a middle mouse wheel button for easier segmentation. 
 +  * [[training:scivis:2023:avizoilastik-tiktorch|How to set up tiktorch for ilastik]].
  
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 ^Time  ^Topic ^Time  ^Topic
-^1:30pm - 1:45pm  | Introduction | +^1:30pm - 1:45pm  | Workflow Overview| 
-^1:45pm - 2:15pm  | Basic Segmentation and Analysis using Avizo |+^1:45pm - 2:15pm  | Basic Segmentation using Avizo |
 ^2:15pm - 2:45pm  | AI-Assisted Segmentation using Avizo | ^2:15pm - 2:45pm  | AI-Assisted Segmentation using Avizo |
 ^2:45pm - 3:00pm  | Coffee Break | ^2:45pm - 3:00pm  | Coffee Break |
 ^3:00pm - 3:30pm  | AI-Assisted Segmentation using Ilastik | ^3:00pm - 3:30pm  | AI-Assisted Segmentation using Ilastik |
-^3:30pm - 4:00pm  | Common Workflows |+^3:30pm - 4:00pm  | Common Analysis Workflows |
  
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 ---- ----
  
- {{tag>workshop}}+ {{tag>workshop AI segmentation analysis Avizo Ilastik}}