Scientific Visualization 101: Avizo/Amira - An Introductory Hands-On Workshop
Date
- Sunday October 22, 2023
- 1:30pm - 4pm
Venue
- Building 5, Level 5, Room 5209
Organizer
Thomas Theußl
Visualization Core Laboratory
thomas.theussl@kaust.edu.sa
Register
Workshop Materials
- Previously recorded workshop on youtube
- Slides: Introduction, Hands-on
- Datasets: datasets.zip
How to Prepare?
- Review and download the workshop materials
- Bring a laptop (Linux/Windows) with Avizo/Amira installed (download from here).
- Alternatively (e.g., on Mac), you can use the IT provided remote workstations in case you do not have Avizo/Amira installed (you have to request the service the first time you use it here)
Overview
Visualization experts from the laboratory will introduce Avizo/Amira - a general-purpose commercial software application for scientific data visualization and analysis. Avizo/Amira users can quickly build visualizations to analyze their data using qualitative and quantitative techniques. The data exploration can be done interactively in 3D on a Desktop. Attendees will participate in hands-on sessions working with Avizo/Amira to create 3D visualizations of scientific datasets.
Who Should Attend?
The target audience for this workshop are KAUST users who are looking for a new scientific visualization solution and have little or no experience with Avizo/Amira or scientific visualization in general.
Agenda
Time | Topic | Speaker |
---|---|---|
~15 min | Introduction | Thomas Theußl |
~45 min | Scientific Visualization: Scalar Fields | Thomas Theußl |
5 - 10 min | — break — | - |
~45 min | Scientific Visualization: Volume Segmentation | Thomas Theußl |
5 - 10 min | — break — | - |
30 min | The Avizo GUI and Features | Thomas Theußl |
on demand | Q&A / Discussion | all |
Useful Resources
- Official Avizo Software for Materials Science site
- Xtra Library for Thermo Scientific Amira, Avizo and PerGeos Software (incuding demo videos)
- Amira-Avizo Learning Center by Thermo Scientific EM & Spectroscopy on youtube
- Avizo Software demo videos by Thermo Scientific EM & Spectroscopy on youtube
- How to use Avizo by Sam Schickler on youtube