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| training:scivis:2025:avizo [2025/01/27 08:49] – Ronell Sicat | training:scivis:2025:avizo [2025/04/28 10:49] (current) – Ronell Sicat | ||
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| * Avizo' | * Avizo' | ||
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| If your research involves visualization and analysis of 2D and 3D datasets such as microscopy image stacks (e.g., CT, SEM, TEM, or Confocal, etc.), this workshop will help you process, visualize, analyze, and ultimately acquire new insight into your data. | If your research involves visualization and analysis of 2D and 3D datasets such as microscopy image stacks (e.g., CT, SEM, TEM, or Confocal, etc.), this workshop will help you process, visualize, analyze, and ultimately acquire new insight into your data. | ||
| - | ===== Agenda | + | ===== Agenda ===== |
| This is a three-day event with topics ranging from beginner, intermediate, | This is a three-day event with topics ranging from beginner, intermediate, | ||
| ==== Beginner: April 21 (Monday) ==== | ==== Beginner: April 21 (Monday) ==== | ||
| + | * Introduction to image/ | ||
| * Software overview, general concepts and user interface | * Software overview, general concepts and user interface | ||
| * Data visualization in 2D&3D and annotations | * Data visualization in 2D&3D and annotations | ||
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| * Automatic Segmentation: | * Automatic Segmentation: | ||
| * Separation, classification, | * Separation, classification, | ||
| + | * Screen capture and animation | ||
| * Recipe and batch processing | * Recipe and batch processing | ||
| ==== Intermediate: | ==== Intermediate: | ||
| - | * Brand new Segmentation+ workroom (requires Avizo 2022.2 and later) | + | * Introduction to image segmentation |
| + | * New Segmentation+ workroom (requires Avizo 2022.2 and later) | ||
| * Multi-material segmentation | * Multi-material segmentation | ||
| * Watershed segmentation | * Watershed segmentation | ||
| * Surface reconstruction and simplification | * Surface reconstruction and simplification | ||
| * Data registration and alignment | * Data registration and alignment | ||
| - | * Screen capture and Animation | ||
| - | * Superpixel tools | ||
| * AI-assisted segmentation tools | * AI-assisted segmentation tools | ||
| + | * KVL segmentation and analysis workstations | ||
| ==== Advanced: April 23 (Wednesday) ==== | ==== Advanced: April 23 (Wednesday) ==== | ||
| - | * Overview | + | * Review |
| - | * Focus on specific extensions | + | |
| - | * Installing Python Environment for Deep Learning | + | |
| * 2D & 3D Deep Learning Training module | * 2D & 3D Deep Learning Training module | ||
| * Deep Learning Prediction Module | * Deep Learning Prediction Module | ||
| * Deep Learning Denoising Module | * Deep Learning Denoising Module | ||
| + | * Core Profile (features from PerGeos) | ||
| + | * Overview of Avizo extensions | ||
| + | * Focus on specific extensions | ||
| * Avizo ToGo | * Avizo ToGo | ||