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vistools [2024/04/24 10:34] – James Kressvistools [2026/01/15 10:32] (current) – Ronell Sicat
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 ===== Avizo ===== ===== Avizo =====
-Avizo is a software application which enables users to perform interactive visualization and computation on 3D data sets. The Avizo interface is modelled on visual programming. Users manipulate data and module components, organized in an interactive graph representation (called Pool), or in a Tree view. Data and modules can be interactively connected together, and controlled with several parameters, creating a visual processing network whose output is displayed in a 3D viewer. With this interface, complex data can be interactively explored and analyzed by applying a controlled sequence of computation and display processes resulting in a meaningful visual representation and associated derived data.+Avizo (also called Amira) is a software application which enables users to perform interactive visualization, automatic segmentation, analysis, and computation on 3D data sets such as tomography and microscopy image stacks. The Avizo interface is modelled on visual programming. Users manipulate data and module components, organized in an interactive graph representation (called Pool), or in a Tree view. Data and modules can be interactively connected together, and controlled with several parameters, creating a visual processing network whose output is displayed in a 3D viewer. With this interface, complex data can be interactively explored and analyzed by applying a controlled sequence of computation and display processes resulting in a meaningful visual representation and associated derived data.
  
 <WRAP center round info 100%> <fs:26px>** Getting Help with Avizo** </fs> <WRAP center round info 100%> <fs:26px>** Getting Help with Avizo** </fs>
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-<WRAP center round box 100%> {{:icon:twbs:link:w-25:h-auto:headset-vr.svg?nolink&}} <fs:26px>** KVL Training on Avizo**</fs>+<WRAP center round box 100%> {{:icon:twbs:link:w-25:h-auto:headset-vr.svg?nolink&}} <fs:26px>** KVL Training on Ilastik**</fs>
   * KVL often runs training on Ilastik, check out our current and past workshops for more: <wrap button>[[training:overview|Training Events]]</wrap>   * KVL often runs training on Ilastik, check out our current and past workshops for more: <wrap button>[[training:overview|Training Events]]</wrap>
   * Here is a link to our recording of our <wrap button>[[https://www.youtube.com/watch?v=63k0fM_w_R8|Introduction to Image Segmentation]]</wrap>   * Here is a link to our recording of our <wrap button>[[https://www.youtube.com/watch?v=63k0fM_w_R8|Introduction to Image Segmentation]]</wrap>
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   * To use Ilastik interactively on the IT Remote Workstations go [[https://gitlab.kaust.edu.sa/kvl/ilastik-configs#user-workflows|HERE]]   * To use Ilastik interactively on the IT Remote Workstations go [[https://gitlab.kaust.edu.sa/kvl/ilastik-configs#user-workflows|HERE]]
   * To install Ilastik locally go [[https://www.ilastik.org/|HERE]]   * To install Ilastik locally go [[https://www.ilastik.org/|HERE]]
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 {{tag>visit avizo paraview help sciviz scientific_visualization software supercomputing ibex shaheen ilastik}} {{tag>visit avizo paraview help sciviz scientific_visualization software supercomputing ibex shaheen ilastik}}